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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019991.1_330_602_F

Intron Information:

Intron Rank:
129001
Intron Class:
major
Intron Phase:
Intron Coordinates:
330 - 602
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CATTCCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.5
0.57
0.8
66.5
35.6
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
49.3
0.03
2
69.94
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019390
Chromosome:
PEDO01019991.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046148
21 - 1186
1166
ENSAPLT00000042932
131 - 1186
1056