About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020015.1_3552_4821_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3552 - 4821
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATCAATG
Flanking Amino Acid:
GLGVYLFRKQEEQAAELAWR
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
49.3
-0.1
1.9
56.49
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017286
Chromosome:
PEDO01020015.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038860
21 - 6290
6270