Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020035.1_268_372_R

Intron Information:

Intron Rank:

137915

Intron Class:

major

Intron Phase:

Intron Coordinates:

268 - 372

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGACCCAA

5'SS Class:

major

3'SS Sequence:

ACCCCAGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCAAT

U12 Branch Point Sequence:

GTGTCCCAACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.2

61.1

41.3

Major BPS

59.3

0.23

1.3

66.9

37.7

Major PPT

0.34

39.9

Minor 5ss

37.3

-1.4

48.3

Minor BPS

45.2

-0.3

2.2

59.56

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021701

Chromosome:

PEDO01020035.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042795

21 - 1005

985