Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020103.1_6574_7048_F

Intron Information:

Intron Rank:

130087

Intron Class:

major

Intron Phase:

Intron Coordinates:

6574 - 7048

Intron Length:

475

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTCCC

5'SS Class:

major

3'SS Sequence:

TTCTCCCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAG

U12 Branch Point Sequence:

TTGTGAGCAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.5

0.32

1.3

57.1

42.2

Major BPS

57.3

0.18

1.7

57.1

49.4

Major PPT

85.5

0.8

0.7

77.2

31.5

Minor 5ss

31.9

-2.1

2.9

41.7

37.6

Minor BPS

40.8

-0.7

2.6

59.55

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020002

Chromosome:

PEDO01020103.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024772

6084 - 7672

1589