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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020106.1_1430_1695_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1430 - 1695
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CCTCCCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CCGTCCCTAACC
Flanking Amino Acid:
SSASFSTTAVSARYGHWHKN
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
74
0.54
0.7
65.5
30.4
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
61.2
0.33
1.8
66.79
45

Associated Gene:

Gene:
STXBP1
Ensembl Gene ID:
ENSAPLG00000020265
Chromosome:
PEDO01020106.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046053
21 - 6640
6620