Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020106.1_4980_5076_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4980 - 5076

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGGAGG

5'SS Class:

major

3'SS Sequence:

CCTCCTTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGAAAA

U12 Branch Point Sequence:

TGGAAAAGGACC

Flanking Amino Acid:

LKEYPAVRYRGDYKDNAMLA

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

60.4

45.8

Major BPS

47.2

-0.1

1.3

41.5

Major PPT

77.3

0.61

0.7

72.1

Minor 5ss

25.8

-2.8

2.9

22.4

37.3

Minor BPS

35.9

-1.1

1.9

43.78

36.6

Associated Gene:

Gene:

STXBP1

Ensembl Gene ID:

ENSAPLG00000020265

Chromosome:

PEDO01020106.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046053

21 - 6640

6620