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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020131.1_2284_2460_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2284 - 2460
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CAGGCTCTGACA
Flanking Amino Acid:
GQIKVWEVQTGHLLFSLLGH
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
45.9
-0.3
1.7
51.15
40.9

Associated Gene:

Gene:
WSB2
Ensembl Gene ID:
ENSAPLG00000003500
Chromosome:
PEDO01020131.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003576
21 - 4232
4212