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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020131.1_2679_2772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2679 - 2772
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
TTCTCCTTCTCC
Flanking Amino Acid:
LIPWPLEEAELCRASERKGH
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
46
-0.3
3.6
73.85
43.3

Associated Gene:

Gene:
WSB2
Ensembl Gene ID:
ENSAPLG00000003500
Chromosome:
PEDO01020131.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003576
21 - 4232
4212