Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020142.1_1216_1307_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1216 - 1307

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGACCG

5'SS Class:

major

3'SS Sequence:

CCTGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

CGTGCTGTAACC

Flanking Amino Acid:

QRSFWLLAQKVHGSLSSVVA

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

43.1

Major BPS

62.2

0.3

1.2

38.7

Major PPT

0.5

0.8

65.4

30.4

Minor 5ss

25.4

-2.8

3.1

30.4

42.9

Minor BPS

49.3

-0

2.1

62.16

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017152

Chromosome:

PEDO01020142.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043577

404 - 2906

2503