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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020142.1_692_792_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
692 - 792
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAG
U12 Branch Point Sequence:
AGGGACTGAGCC
Flanking Amino Acid:
DSFASLHPDEPDALPAKGRE
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
46.8
-0.2
1.6
43
41.8
Major PPT
67.9
0.4
0.8
58.1
33.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
42.3
-0.6
1.8
47.73
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017152
Chromosome:
PEDO01020142.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043577
404 - 2906
2503