Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020168.1_1132_1788_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1132 - 1788

Intron Length:

657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCCCAT

U12 Branch Point Sequence:

ATGCCACCATCC

Flanking Amino Acid:

PDDEGLLSVQTIQGIQAKCF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

67.2

38.1

Major BPS

63.5

0.33

1.2

72.5

34.6

Major PPT

70.6

0.46

0.8

61.7

34.9

Minor 5ss

26.2

-2.7

3.2

34.3

Minor BPS

38.1

-0.9

2.1

49.06

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026656

Chromosome:

PEDO01020168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046578

777 - 2747

1971