About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020172.1_1712_1973_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1712 - 1973

Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTTTGTAGG

5'SS Class:
major

3'SS Sequence:
CGTGTCCTGGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTCTGAC

U12 Branch Point Sequence:
TGGTGTCTGACC

Flanking Amino Acid:
KIFDTNLFFRDLQQYYNNQG

Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.4
0.57
1.2
66.5
44.5

Major BPS
63.7
0.34
1.2
57
41.8

Major PPT
66.9
0.38
1
61.7
40

Minor 5ss
37.6
-1.4
2.4
43.2
43.7

Minor BPS
46.1
-0.3
2.1
58.76
40.7

Associated Gene:

Gene:
IRF8

Ensembl Gene ID:

Chromosome:
PEDO01020172.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

222 - 2623
2402