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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020172.1_766_930_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
766 - 930
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTCTGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
ACATCTCTGACA
Flanking Amino Acid:
PDWWVQQPNPTLPLMNGYTG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75
0.56
0.8
68.4
32
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
53
0.09
1.6
61.88
38.1

Associated Gene:

Gene:
IRF8
Ensembl Gene ID:
ENSAPLG00000010348
Chromosome:
PEDO01020172.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010799
222 - 2623
2402