About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020176.1_337_628_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
337 - 628
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTTTGGA
5'SS Class:
major
3'SS Sequence:
CACCTTGGATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
CCACCTTGGATG
Flanking Amino Acid:
EVMIVSGGGRVSPGG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1
55.7
37
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
44.9
-0.2
1.7
50.2
42.5
Minor 5ss
32.9
-1.9
3.1
37.7
42.2
Minor BPS
44.7
-0.5
1.5
40.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016821
Chromosome:
PEDO01020176.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030078
61 - 643
583