Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020190.1_2259_2367_F

Intron Information:

Intron Rank:

143960

Intron Class:

major

Intron Phase:

Intron Coordinates:

2259 - 2367

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGCTAT

5'SS Class:

major

3'SS Sequence:

TTAACCTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

GGAGATTTAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

0.9

72.8

34.5

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

71.6

0.49

65.8

40.5

Minor 5ss

40.2

-1.1

3.1

52.2

Minor BPS

51.5

0.03

1.6

57.84

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027594

Chromosome:

PEDO01020190.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034752

1911 - 3714

1804