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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020195.1_1828_2036_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1828 - 2036
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCATTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCACCCTGACCC
Flanking Amino Acid:
GHLVTLPDITSVAKCLGAKT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
72.7
0.51
0.8
64.3
36.5
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
47.4
-0.2
1.8
53.45
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019217
Chromosome:
PEDO01020195.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028050
1430 - 2588
1159