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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020195.1_2265_2356_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2265 - 2356
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CAAAATCCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
GCCACCAAAATC
Flanking Amino Acid:
SVHPFDHPLVWQGHASLVQE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
58.5
0.19
1
47.3
40.6
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
43.8
-0.4
1.9
48.34
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019217
Chromosome:
PEDO01020195.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028050
1430 - 2588
1159