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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020208.1_546_639_F

Intron Information:

Intron Rank:
123809
Intron Class:
major
Intron Phase:
Intron Coordinates:
546 - 639
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
GGTTCTTGCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
78.3
0.64
0.9
69.1
41.7
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
48.4
-0.1
1.9
60.57
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016764
Chromosome:
PEDO01020208.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046045
21 - 2022
2002