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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020212.1_4797_4904_R

Intron Information:

Intron Rank:
137583
Intron Class:
major
Intron Phase:
Intron Coordinates:
4797 - 4904
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTTTGTTTG
5'SS Class:
major
3'SS Sequence:
GCTTCCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTCCTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
63.9
42.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.1
0.63
0.8
71.8
32.8
Minor 5ss
46.7
-0.3
2.4
60.1
44.4
Minor BPS
69.9
0.49
1.3
68.31
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021512
Chromosome:
PEDO01020212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041903
4380 - 5620
1241