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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020216.1_102_308_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102 - 308
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
ATTTAAGGGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTATTTAAGG
Flanking Amino Acid:
RFGVKKSDFGFRDWL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.6
39.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
48
-0.1
1.3
46.1
44.5
Minor 5ss
33.8
-1.8
2.8
32.8
41.8
Minor BPS
62.6
0.26
1.9
72
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028768
Chromosome:
PEDO01020216.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017253
87 - 1085
999