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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020216.1_888_974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
888 - 974
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACGACC
5'SS Class:
major
3'SS Sequence:
CCCTCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
ACCCCCAGCACC
Flanking Amino Acid:
KYRYRYPKGESYEDLVQRLE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.5
39.1
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
70.5
0.46
0.8
61.2
29.2
Minor 5ss
33.6
-1.9
3.1
43.7
43.7
Minor BPS
41.2
-0.7
2
48.05
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028768
Chromosome:
PEDO01020216.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017253
87 - 1085
999