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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020255.1_1967_2241_F

Intron Information:

Intron Rank:
139644
Intron Class:
major
Intron Phase:
Intron Coordinates:
1967 - 2241
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GCTGCCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
79.3
0.66
0.7
69.9
30.9
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
50.7
0.1
1.9
69.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025064
Chromosome:
PEDO01020255.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039327
1790 - 3412
1623