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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020260.1_1892_3068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1892 - 3068
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACACCC
Flanking Amino Acid:
SAPLKERYAEEHGLDFQRLL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79.5
0.66
0.7
73.1
25.1
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
40.4
-0.7
1.9
48.31
41.5

Associated Gene:

Gene:
PMVK
Ensembl Gene ID:
ENSAPLG00000024488
Chromosome:
PEDO01020260.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039408
814 - 3890
3077