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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020299.1_196_1845_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
196 - 1845
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGTCCCTT
5'SS Class:
weak_minor
3'SS Sequence:
GATGCTGATGCAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTGACCTTGAGT
Flanking Amino Acid:
SRILPLWVHFGLRAPPAVLA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
47.9
-0.1
1.2
47.1
42.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
62.4
0.28
1.1
54.7
44.6
Minor 5ss
59
0.3
2.7
79
36.5
Minor BPS
57.7
0.32
1.8
71.55
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019462
Chromosome:
PEDO01020299.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029102
82 - 2211
2130