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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020308.1_3022_4387_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3022 - 4387
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTTAG
U12 Branch Point Sequence:
GTGCGCTTAGCC
Flanking Amino Acid:
MSDEEIEYIQRGGPE*
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
46
-0.2
1.6
40.7
42
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
48.7
-0.1
2
60.71
44.2

Associated Gene:

Gene:
MRPS36
Ensembl Gene ID:
ENSAPLG00000005421
Chromosome:
PEDO01020308.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005590
6 - 4405
4400