About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020314.1_11186_11299_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11186 - 11299
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGCGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
GAGCCCATCACC
Flanking Amino Acid:
LARMEMSCLQEPSFLEQPPG
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
73.4
0.53
1
66
40.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
46.2
-0.3
2
55.17
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018521
Chromosome:
PEDO01020314.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044015
10375 - 14184
3810