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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020314.1_11362_11605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11362 - 11605
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
TTTTCCTTCCCA
Flanking Amino Acid:
PRRHLTSTPERDCKMGLLQE
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
48.9
-0
3.6
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018521
Chromosome:
PEDO01020314.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044015
10375 - 14184
3810