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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020314.1_9052_9160_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9052 - 9160
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CTCCTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
AACAACTCAACT
Flanking Amino Acid:
KPRRQFIYSLDLARLFLWVL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
74.7
0.56
0.8
73.8
29.7
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
49.8
0.06
1.8
66.27
43.5

Associated Gene:

Gene:
TSTA3
Ensembl Gene ID:
ENSAPLG00000008232
Chromosome:
PEDO01020314.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008584
4478 - 9902
5425