Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020330.1_2737_2847_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2737 - 2847

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGGGTG

5'SS Class:

major

3'SS Sequence:

TCCCGTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCAGAC

U12 Branch Point Sequence:

CCCGCCAGACCC

Flanking Amino Acid:

NLKIHNRSHTGEKPYICPYE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.3

67.8

43.5

Major BPS

43.6

-0.4

1.1

34.3

33.1

Major PPT

71.1

0.47

0.8

64.8

30.8

Minor 5ss

28.2

-2.5

3.5

37.8

47.1

Minor BPS

39.6

-0.8

1.9

43.21

44.3

Associated Gene:

Gene:

GLIS2

Ensembl Gene ID:

ENSAPLG00000028142

Chromosome:

PEDO01020330.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036569

358 - 3141

2784