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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020343.1_530_960_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
530 - 960
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
AGCTAATTAACA
Flanking Amino Acid:
KVKNFITCFKDQRFLTFFFE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
78.5
0.64
0.8
73.7
31
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
55
0.15
1.8
65.19
40.4

Associated Gene:

Gene:
C8orf82
Ensembl Gene ID:
ENSAPLG00000021106
Chromosome:
PEDO01020343.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026058
4 - 1141
1138