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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020347.1_12125_12835_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12125 - 12835
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATTT
Flanking Amino Acid:
LTLLDDRFEKFFEQFDEDEI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
65.5
0.56
1.5
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007443
Chromosome:
PEDO01020347.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007745
7730 - 17370
9641