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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020347.1_15421_16020_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15421 - 16020
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTACAT
Flanking Amino Acid:
RKQAIKEERKERRMEKKANK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
70.1
0.45
1
64.7
40.4
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
45.8
-0.2
2.2
69.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007443
Chromosome:
PEDO01020347.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007745
7730 - 17370
9641