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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020347.1_8939_9975_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8939 - 9975
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTAGTAGCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
AGTACAAAAATA
Flanking Amino Acid:
SSNSVANTEEVPLTAIQGTS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
71.1
37.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
50.2
0
1.2
49.1
42.4
Minor 5ss
34.7
-1.7
3.9
49
47.2
Minor BPS
42.1
-0.6
2
53.84
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025229
Chromosome:
PEDO01020347.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037894
8805 - 11018
2214