Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020362.1_637_1064_F

Intron Information:

Intron Rank:

134317

Intron Class:

major

Intron Phase:

Intron Coordinates:

637 - 1064

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTGAGTGTC

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

ACACACTGATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

69.4

35.6

Major BPS

71.2

0.53

37.5

Major PPT

97.2

1.06

0.5

96.4

12.2

Minor 5ss

33.1

-1.9

3.3

40.1

Minor BPS

43.3

-0.4

1.8

54.93

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022199

Chromosome:

PEDO01020362.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036276

21 - 2322

2302

ENSAPLT00000024441

21 - 2322

2302