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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020396.1_536_1041_R

Intron Information:

Intron Rank:
145369
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
536 - 1041
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGAACTCTGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTGAA
U12 Branch Point Sequence:
ACTGCTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
56.9
0.17
1.3
51.3
44.2
Major PPT
59.3
0.21
1
55
41
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
61.6
0.44
1.6
74.82
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025609
Chromosome:
PEDO01020396.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040727
21 - 1269
1249