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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020398.1_1722_2058_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1722 - 2058
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CCCCATATAATG
Flanking Amino Acid:
KKEKGYNVAPGSNPSI*
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
41.5
-0.7
1.7
37.84
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017425
Chromosome:
PEDO01020398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038601
544 - 4080
3537