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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020398.1_1950_2058_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1950 - 2058
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GGTTTCTCATGG
Flanking Amino Acid:
KKEKGYNVAPGSEWGSNSSN
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
43.5
-0.6
2
48.7
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017425
Chromosome:
PEDO01020398.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041964
1841 - 4080
2240