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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020438.1_507_999_F

Intron Information:

Intron Rank:
144007
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
507 - 999
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
CAG|GTGTCCCCA
5'SS Class:
weak_major
3'SS Sequence:
CAATGTCCCCAAA|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAAATAT
U12 Branch Point Sequence:
ATGTCCCCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.2
51.2
41.5
Major BPS
48.9
-0
1.1
45
36.5
Major PPT
33.7
-0.9
3.1
41.6
38.2
Minor 5ss
44.3
-0.6
2.8
57.3
46.9
Minor BPS
50.3
0.09
2
73.28
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027623
Chromosome:
PEDO01020438.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030964
21 - 1130
1110
ENSAPLT00000027913
21 - 1130
1110