Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020464.1_5026_15800_R

Intron Information:

Intron Rank:

151084

Intron Class:

major

Intron Phase:

Intron Coordinates:

5026 - 15800

Intron Length:

10775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGCTGAT

5'SS Class:

major

3'SS Sequence:

TTCACCTTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TCTTGTTCACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.2

68.4

38.7

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

77.5

0.62

0.8

69.6

36.6

Minor 5ss

33.1

-1.9

3.5

48.2

47.9

Minor BPS

47.7

-0.1

2.2

71.32

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028786

Chromosome:

PEDO01020464.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022587

3429 - 15880

12452