Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020464.1_5026_16524_R

Intron Information:

Intron Rank:

151082

Intron Class:

major

Intron Phase:

Intron Coordinates:

5026 - 16524

Intron Length:

11499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTATTG

5'SS Class:

major

3'SS Sequence:

TTCACCTTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TCTTGTTCACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

65.3

41.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

77.5

0.62

0.8

69.6

36.6

Minor 5ss

40.2

-1.1

3.4

55.8

48.4

Minor BPS

47.7

-0.1

2.2

71.32

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028786

Chromosome:

PEDO01020464.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021652

1185 - 16755

15571