Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020484.1_3679_3778_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3679 - 3778

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

TGCTTTTGGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGCCAT

U12 Branch Point Sequence:

TGCTTTTGGACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

62.1

43.9

Major BPS

54.4

0.11

1.4

64.4

42.8

Major PPT

70.2

0.46

1.1

67.8

42.5

Minor 5ss

32.6

-2

2.8

43.3

43.7

Minor BPS

53.5

0.1

1.4

62.82

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018935

Chromosome:

PEDO01020484.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026588

1234 - 4475

3242