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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020484.1_3915_4236_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3915 - 4236
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCAGCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.9
0.45
0.8
61.3
35.1
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
46
-0.3
2.3
69.29
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018935
Chromosome:
PEDO01020484.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026588
1234 - 4475
3242