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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020503.1_14287_14668_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14287 - 14668
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
GCCCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TGAGCCCTCACT
Flanking Amino Acid:
VTGVLDEETKMWMKRPRCGV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74
30.6
Major BPS
75
0.62
1
65.3
41.5
Major PPT
65.8
0.36
1
60.9
35.1
Minor 5ss
38.4
-1.3
2.9
49.6
39.8
Minor BPS
48.3
-0
2.2
70.43
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001460
Chromosome:
PEDO01020503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001736
13099 - 18642
5544