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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020503.1_9583_10234_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9583 - 10234
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTTCTTGCAAT
Flanking Amino Acid:
EEFDLPTFYKDPSFHISLAW
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.9
0.79
0.8
82.1
34.6
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
49.7
0.06
2
74.95
41.5

Associated Gene:

Gene:
USB1
Ensembl Gene ID:
ENSAPLG00000002756
Chromosome:
PEDO01020503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002783
6032 - 11436
5405