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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020518.1_262_1148_F

Intron Information:

Intron Rank:
141429
Intron Class:
major
Intron Phase:
Intron Coordinates:
262 - 1148
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCATCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTATTATTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.2
0.48
0.9
61.8
39
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
50.6
-0
1.9
63.84
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026163
Chromosome:
PEDO01020518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044579
21 - 2228
2208