About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_12386_12480_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12386 - 12480
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTCAG
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CGGGTCTCACCC
Flanking Amino Acid:
FGQTPCQLLKEPHPARLSAE
Intron Amino Acid Position:
1845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.2
55.8
44.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.1
0.7
0.7
72.9
32
Minor 5ss
32.3
-2
3.1
40
46.1
Minor BPS
42.8
-0.5
1.8
46.12
43.1

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671