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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_13500_13604_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13500 - 13604
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCCCCTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
GTCCCCTCCACC
Flanking Amino Acid:
TCMVWQVLQQGGFSSGLAPK
Intron Amino Acid Position:
2040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
69.8
0.44
0.9
62.5
33.2
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
48.7
-0.1
2
61.1
43.9

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671