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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_13966_14048_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13966 - 14048
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCCCCCTACTC
Flanking Amino Acid:
TAVGERASLKDKFALHLYSV
Intron Amino Acid Position:
2133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.4
0.55
0.7
68.7
25
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
49.1
-0
2
64.29
41.6

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671