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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_14198_14287_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14198 - 14287
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CATCCCCCAAAT
Flanking Amino Acid:
QCGLEIRDLQSLRAAMPPVP
Intron Amino Acid Position:
2182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
76.2
0.59
0.7
71
26.8
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
46.6
-0.1
2
65.69
43.8

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671