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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01020535.1_1592_1733_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1592 - 1733
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTCCCCGAGTC
Flanking Amino Acid:
SKLLLYYTPQACRNNICLDL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
45
-0.4
1.9
58.95
39.5

Associated Gene:

Gene:
NBEAL2
Ensembl Gene ID:
ENSAPLG00000005038
Chromosome:
PEDO01020535.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005293
21 - 14691
14671